Statistics and Breed-wide Allele Frequency - Swedish Vallhund

Updated Dec 3, 2024

DLA Class I Haplotype Frequencies

DLA1 #	STR types	Swedish Vallhund (n=611)
1006	387 375 293 180	0.2308
1009	382 377 277 184	0.0532
1068	380 373 287 181	0.3674
1177	395 373 277 181	0.1678
1178	386 365 277 186	0.1653
1179	395 375 293 180	0.0025
1259	387 373 287 181	0.0131

DLA Class II Haplotype Frequencies

DLA2 #	STR types	Swedish Vallhund (n=611)
2007	351 327 280	0.2332
2022	339 327 282	0.0532
2053	343 324 280	0.5458
2066	339 324 280	0.0008
2084	339 323 268	0.1669

Allele Frequencies

#	Locus Name	Allele	Swedish Vallhund (n=612)
1	AHT121	94	0.1193
		96	0.3023
		98	0.0760
		100	0.4322
		102	0.0645
		106	0.0057
2	AHT137	131	0.3268
		133	0.0204
		135	0.1176
		137	0.5310
		139	0.0016
		147	0.0025
3	AHTH130	119	0.1242
		121	0.0899
		127	0.0621
		129	0.0131
		131	0.0008
		133	0.0016
		135	0.7083
4	AHTh171-A	221	0.6520
		225	0.1552
		227	0.0359
		229	0.0547
		233	0.1021
5	AHTh260	246	0.5408
		248	0.2974
		250	0.0033
		254	0.1585
6	AHTk211	87	0.4175
		89	0.1340
		91	0.4485
7	AHTk253	282	0.1993
		286	0.0670
		288	0.3603
		290	0.0931
		292	0.1904
		294	0.0899
8	C22.279	116	0.3121
		118	0.0016
		124	0.6332
		130	0.0531
9	FH2001	132	0.2394
		140	0.0065
		144	0.6225
		148	0.0703
		152	0.0613
10	FH2054	148	0.1332
		152	0.1283
		156	0.6397
		160	0.0425
		164	0.0033
		172	0.0523
		176	0.0008
11	FH2848	232	0.1642
		236	0.0327
		238	0.1111
		240	0.6740
		244	0.0180
12	INRA21	95	0.0368
		97	0.2328
		99	0.0515
		101	0.6789
13	INU005	122	0.0466
		124	0.9036
		126	0.0498
14	INU030	144	0.2092
		148	0.0449
		150	0.6944
		152	0.0515
15	INU055	210	0.2680
		212	0.0931
		214	0.3578
		216	0.2810
16	LEI004	85	0.1356
		95	0.5270
		97	0.0539
		105	0.1511
		107	0.1324
17	REN105L03	231	0.1201
		233	0.2026
		235	0.1650
		239	0.0923
		241	0.4199
18	REN162C04	200	0.2394
		202	0.2900
		204	0.2067
		206	0.2606
		210	0.0033
19	REN169D01	202	0.2598
		210	0.1038
		216	0.1503
		218	0.4861
20	REN169O18	162	0.6438
		170	0.3521
		174	0.0041
21	REN247M23	268	0.8750
21	REN247M23	272	0.1250
22	REN54P11	226	0.8946
		234	0.0891
		244	0.0163
23	REN64E19	145	0.0752
		147	0.4592
		149	0.4641
		153	0.0016
24	VGL0760	12	0.0678
		14	0.1095
		15	0.0033
		20.2	0.2949
		21.2	0.2892
		22.2	0.0082
		23.2	0.0523
		24.2	0.1748
25	VGL0910	18.1	0.0016
		19.1	0.1397
		20.1	0.4592
		21.1	0.3456
		22.1	0.0523
		23.1	0.0016
26	VGL1063	8	0.0196
		12	0.1291
		13	0.1691
		14	0.0907
		15	0.4469
		16	0.0090
		19	0.0302
		20	0.0735
		21	0.0319
27	VGL1165	18	0.0147
		20	0.4608
		22	0.0008
		23	0.2582
		24	0.0261
		25	0.1487
		26	0.0907
28	VGL1828	15	0.0016
		16	0.0466
		17	0.2304
		18	0.0008
		19	0.6193
		20	0.1013
29	VGL2009	13	0.1250
		14	0.0196
		15	0.6560
		16	0.1936
		17	0.0057
30	VGL2409	14	0.2582
		15	0.0016
		16	0.4428
		17	0.2949
		18	0.0016
		19	0.0008
31	VGL2918	13	0.2042
		14	0.6740
		15	0.0368
		17.3	0.0008
		18.3	0.0433
		19.3	0.0384
		20.3	0.0025
32	VGL3008	16	0.2418
		17	0.4959
		18	0.1871
		19	0.0139
		20	0.0613
33	VGL3235	14	0.5825
		15	0.0842
		16	0.0074
		17	0.0155
		18	0.3105

Standard genetic assessment based on 33 autosomal STR loci

Swedish Vallhund

		N	Na	Ne	Ho	He	F
	Mean	612	5.091	2.583	0.563	0.568	0.010
	SE		0.269	0.147	0.026	0.026	0.007

Standard genetic assessment based on 7 STRs in the DLA region

Swedish Vallhund

		N	Na	Ne	Ho	He	F
	Mean	612	3.571	2.644	0.616	0.597	-0.032
	SE		0.275	0.246	0.043	0.041	0.008

Standard genetic assessment for individual STR loci

Swedish Vallhund

#	Locus	N	Na	Ne	Ho	He	F
1	AHT121	612	6	3.307	0.662	0.698	0.051
2	AHT137	612	6	2.481	0.564	0.597	0.056
3	AHTH130	612	7	1.889	0.498	0.471	-0.059
4	AHTh171-A	612	5	2.156	0.547	0.536	-0.021
5	AHTh260	612	4	2.463	0.600	0.594	-0.010
6	AHTk211	612	3	2.542	0.623	0.607	-0.026
7	AHTk253	612	6	4.405	0.794	0.773	-0.027
8	C22.279	612	4	1.995	0.477	0.499	0.044
9	FH2001	612	5	2.205	0.544	0.546	0.004
10	FH2054	612	7	2.232	0.592	0.552	-0.071
11	FH2848	612	5	2.020	0.505	0.505	0.000
12	INRA21	612	4	1.926	0.479	0.481	0.004
13	INU005	612	3	1.218	0.163	0.179	0.086
14	INU030	612	4	1.884	0.480	0.469	-0.024
15	INU055	612	4	3.478	0.683	0.712	0.041
16	LEI004	612	5	2.947	0.621	0.661	0.060
17	REN105L03	612	5	3.737	0.763	0.732	-0.042
18	REN162C04	612	5	3.967	0.709	0.748	0.052
19	REN169D01	612	4	2.966	0.641	0.663	0.034
20	REN169O18	612	3	1.857	0.446	0.462	0.033
21	REN247M23	612	2	1.280	0.217	0.219	0.007
22	REN54P11	612	3	1.237	0.186	0.191	0.027
23	REN64E19	612	4	2.316	0.580	0.568	-0.021
24	VGL0760	612	8	4.533	0.779	0.779	-0.000
25	VGL0910	612	6	2.837	0.623	0.647	0.039
26	VGL1063	612	9	3.831	0.742	0.739	-0.004
27	VGL1165	612	7	3.224	0.706	0.690	-0.023
28	VGL1828	612	6	2.227	0.542	0.551	0.015
29	VGL2009	612	5	2.066	0.523	0.516	-0.013
30	VGL2409	612	6	2.859	0.650	0.650	-0.000
31	VGL2918	612	7	1.997	0.495	0.499	0.008
32	VGL3008	612	5	2.912	0.658	0.657	-0.003
33	VGL3235	612	5	2.257	0.493	0.557	0.114

Standard genetic assessment for 7 STRs in the DLA region

Swedish Vallhund

#	Locus	N	Na	Ne	Ho	He	F
1	DLA I-3CCA	612	5	3.942	0.781	0.746	-0.046
2	DLA I-4ACA	612	4	2.593	0.618	0.614	-0.005
3	DLA I-4BCT	612	3	2.869	0.693	0.652	-0.063
4	DLA1131	612	4	2.593	0.618	0.614	-0.005
5	5ACA	612	3	2.493	0.616	0.599	-0.029
6	5ACT	612	3	2.448	0.608	0.591	-0.028
7	5BCA	612	3	1.567	0.379	0.362	-0.048

Veterinary Genetics Laboratory

Statistics and Breed-wide Allele Frequency - Swedish Vallhund

DLA Class I Haplotype Frequencies

DLA Class II Haplotype Frequencies

Allele Frequencies

Standard genetic assessment based on 33 autosomal STR loci

Standard genetic assessment based on 7 STRs in the DLA region

Standard genetic assessment for individual STR loci

Standard genetic assessment for 7 STRs in the DLA region

Contact the VGL

Statistics and Breed-wide Allele Frequency - Swedish Vallhund

DLA Class I Haplotype Frequencies

DLA Class II Haplotype Frequencies

Allele Frequencies

Standard genetic assessment based on 33 autosomal STR loci

Standard genetic assessment based on 7 STRs in the DLA region

Standard genetic assessment for individual STR loci

Standard genetic assessment for 7 STRs in the DLA region

Contact the VGL

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