Statistics and Breed-wide Allele Frequency - Shiloh Shepherd

Updated Jan 8, 2025

DLA Class I Haplotype Frequencies

DLA1 #	STR types	Shiloh Shepherd (n=114)
1035	386 373 277 184	0.018
1052	380 372 289 184	0.360
1068	380 373 287 181	0.487
1165	392 369 281 182	0.075
1166	388 379 277 184	0.039
1167	397 381 277 184	0.022

DLA Class II Haplotype Frequencies

DLA2 #	STR types	Shiloh Shepherd (n=114)
2017	343 322 280	0.360
2022	339 327 282	0.039
2026	351 324 284	0.018
2053	343 324 280	0.509
2080	339 325 276	0.075

Allele Frequencies

#	Locus Name	Allele	Shiloh Shepherd (n=114)
1	AHT121	88	0.013
		98	0.276
		102	0.526
		104	0.083
		108	0.092
		112	0.009
2	AHT137	131	0.127
		137	0.838
		139	0.018
		147	0.009
		149	0.004
		153	0.004
3	AHTH130	123	0.162
		125	0.044
		127	0.715
		131	0.079
4	AHTh171-A	219	0.114
		223	0.360
		225	0.193
		233	0.333
5	AHTh260	238	0.215
		242	0.566
		244	0.004
		246	0.145
		248	0.004
		252	0.066
6	AHTk211	87	0.066
		89	0.364
		91	0.035
		93	0.004
		95	0.531
7	AHTk253	286	0.004
		288	0.803
		292	0.193
8	C22.279	116	0.649
		118	0.075
		126	0.276
9	FH2001	124	0.066
		132	0.039
		144	0.645
		148	0.250
10	FH2054	148	0.035
		152	0.522
		156	0.118
		164	0.044
		168	0.246
		176	0.035
11	FH2848	232	0.061
		234	0.044
		238	0.333
		240	0.417
		242	0.145
12	INRA21	91	0.004
		95	0.211
		97	0.136
		99	0.276
		101	0.373
13	INU005	124	0.382
		126	0.570
		132	0.048
14	INU030	146	0.057
		148	0.057
		150	0.724
		152	0.162
15	INU055	210	0.667
		214	0.031
		218	0.202
		220	0.101
16	LEI004	85	0.627
		95	0.368
		107	0.004
17	REN105L03	227	0.096
		231	0.105
		233	0.088
		235	0.246
		241	0.465
18	REN162C04	200	0.355
		204	0.031
		206	0.434
		212	0.180
19	REN169D01	212	0.219
19	REN169D01	216	0.781
20	REN169O18	162	0.149
		164	0.096
		166	0.377
		168	0.303
		174	0.075
21	REN247M23	268	0.355
		270	0.088
		272	0.079
		274	0.018
		276	0.018
		278	0.443
22	REN54P11	226	0.566
		232	0.013
		234	0.412
		240	0.009
23	REN64E19	139	0.127
		147	0.022
		151	0.096
		153	0.105
		155	0.649
24	VGL0760	13	0.048
		18.2	0.140
		19.2	0.215
		20.2	0.070
		21.2	0.320
		22.2	0.184
		23.2	0.022
25	VGL0910	13	0.127
		17.1	0.136
		19.1	0.215
		20.1	0.351
		21.1	0.167
		22.1	0.004
26	VGL1063	9	0.004
		10	0.044
		12	0.750
		14	0.053
		15	0.096
		18	0.053
27	VGL1165	14	0.044
		15	0.149
		16	0.018
		17	0.088
		19	0.061
		22	0.211
		25	0.202
		28	0.184
		29	0.044
28	VGL1828	15	0.013
		16	0.004
		17	0.088
		19	0.882
		20	0.013
29	VGL2009	11	0.873
		12	0.048
		13	0.018
		14	0.035
		15	0.026
30	VGL2409	15	0.627
		16	0.197
		17	0.105
		18	0.070
31	VGL2918	13	0.127
		14	0.307
		18.3	0.022
		19.3	0.044
		20.3	0.167
		21.3	0.333
32	VGL3008	10	0.018
		14	0.022
		15	0.263
		16	0.132
		17	0.171
		18	0.184
		20	0.053
		21	0.158
33	VGL3235	14	0.535
		15	0.268
		16	0.184
		17	0.013

Standard genetic assessment based on 33 autosomal STR loci

Shiloh Shepherd

		N	Na	Ne	Ho	He	F
	Mean	114	4.909	2.727	0.587	0.568	-0.028
	SE		0.255	0.210	0.031	0.029	0.012

Standard genetic assessment based on 7 STRs in the DLA region

Shiloh Shepherd

		N	Na	Ne	Ho	He	F
	Mean	114	4.000	1.988	0.398	0.447	0.079
	SE		0.286	0.218	0.049	0.065	0.030

Standard genetic assessment for individual STR loci

Shiloh Shepherd

#	Locus	N	Na	Ne	Ho	He	F
1	AHT121	114	6	2.710	0.711	0.631	-0.126
2	AHT137	114	6	1.392	0.246	0.282	0.128
3	AHTH130	114	4	1.833	0.509	0.454	-0.120
4	AHTh171-A	114	4	3.440	0.781	0.709	-0.101
5	AHTh260	114	6	2.553	0.623	0.608	-0.024
6	AHTk211	114	5	2.382	0.623	0.580	-0.073
7	AHTk253	114	3	1.467	0.325	0.319	-0.019
8	C22.279	114	3	1.987	0.553	0.497	-0.113
9	FH2001	114	4	2.066	0.588	0.516	-0.139
10	FH2054	114	6	2.848	0.667	0.649	-0.027
11	FH2848	114	5	3.212	0.719	0.689	-0.045
12	INRA21	114	5	3.595	0.702	0.722	0.028
13	INU005	114	3	2.114	0.596	0.527	-0.132
14	INU030	114	4	1.797	0.482	0.443	-0.088
15	INU055	114	4	2.015	0.518	0.504	-0.027
16	LEI004	114	3	1.890	0.518	0.471	-0.099
17	REN105L03	114	5	3.283	0.693	0.695	0.004
18	REN162C04	114	4	2.873	0.702	0.652	-0.076
19	REN169D01	114	2	1.521	0.333	0.342	0.027
20	REN169O18	114	5	3.690	0.763	0.729	-0.047
21	REN247M23	114	6	2.967	0.693	0.663	-0.045
22	REN54P11	114	4	2.039	0.544	0.510	-0.067
23	REN64E19	114	5	2.181	0.518	0.542	0.044
24	VGL0760	114	7	4.760	0.851	0.790	-0.077
25	VGL0910	114	6	4.315	0.763	0.768	0.007
26	VGL1063	114	6	1.726	0.395	0.421	0.062
27	VGL1165	114	9	6.377	0.781	0.843	0.074
28	VGL1828	114	5	1.273	0.184	0.215	0.142
29	VGL2009	114	5	1.305	0.228	0.234	0.024
30	VGL2409	114	4	2.230	0.518	0.552	0.062
31	VGL2918	114	6	3.972	0.763	0.748	-0.020
32	VGL3008	114	8	5.610	0.851	0.822	-0.035
33	VGL3235	114	4	2.551	0.632	0.608	-0.039

Standard genetic assessment for 7 STRs in the DLA region

Shiloh Shepherd

#	Locus	N	Na	Ne	Ho	He	F
1	DLA I-3CCA	114	5	1.380	0.281	0.276	-0.019
2	DLA I-4ACA	114	5	2.555	0.518	0.609	0.150
3	DLA I-4BCT	114	4	2.644	0.535	0.622	0.140
4	DLA1131	114	3	2.299	0.491	0.565	0.131
5	5ACA	114	3	1.303	0.228	0.233	0.019
6	5ACT	114	4	2.419	0.491	0.587	0.162
7	5BCA	114	4	1.313	0.246	0.238	-0.030

Veterinary Genetics Laboratory

Statistics and Breed-wide Allele Frequency - Shiloh Shepherd

DLA Class I Haplotype Frequencies

DLA Class II Haplotype Frequencies

Allele Frequencies

Standard genetic assessment based on 33 autosomal STR loci

Standard genetic assessment based on 7 STRs in the DLA region

Standard genetic assessment for individual STR loci

Standard genetic assessment for 7 STRs in the DLA region

Contact the VGL

Statistics and Breed-wide Allele Frequency - Shiloh Shepherd

DLA Class I Haplotype Frequencies

DLA Class II Haplotype Frequencies

Allele Frequencies

Standard genetic assessment based on 33 autosomal STR loci

Standard genetic assessment based on 7 STRs in the DLA region

Standard genetic assessment for individual STR loci

Standard genetic assessment for 7 STRs in the DLA region

Contact the VGL

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