Statistics and Breed-wide Allele Frequency - Shiloh Shepherd

Updated Nov 21, 2024

DLA Class I Haplotype Frequencies

DLA1 #	STR types	Shiloh Shepherd (n=112)
1035	386 373 277 184	0.018
1052	380 372 289 184	0.357
1068	380 373 287 181	0.487
1165	392 369 281 182	0.076
1166	388 379 277 184	0.040
1167	397 381 277 184	0.022

DLA Class II Haplotype Frequencies

DLA2 #	STR types	Shiloh Shepherd (n=112)
2017	343 322 280	0.357
2022	339 327 282	0.040
2026	351 324 284	0.018
2053	343 324 280	0.509
2080	339 325 276	0.076

Allele Frequencies

#	Locus Name	Allele	Shiloh Shepherd (n=112)
1	AHT121	88	0.013
		98	0.281
		102	0.527
		104	0.080
		108	0.089
		112	0.009
2	AHT137	131	0.129
		137	0.835
		139	0.018
		147	0.009
		149	0.004
		153	0.004
3	AHTH130	123	0.165
		125	0.045
		127	0.710
		131	0.080
4	AHTh171-A	219	0.112
		223	0.357
		225	0.196
		233	0.335
5	AHTh260	238	0.219
		242	0.567
		244	0.004
		246	0.138
		248	0.004
		252	0.067
6	AHTk211	87	0.063
		89	0.371
		91	0.036
		93	0.004
		95	0.527
7	AHTk253	286	0.004
		288	0.804
		292	0.192
8	C22.279	116	0.647
		118	0.076
		126	0.277
9	FH2001	124	0.067
		132	0.040
		144	0.652
		148	0.241
10	FH2054	148	0.036
		152	0.518
		156	0.116
		164	0.045
		168	0.250
		176	0.036
11	FH2848	232	0.063
		234	0.036
		238	0.339
		240	0.415
		242	0.147
12	INRA21	91	0.004
		95	0.205
		97	0.138
		99	0.277
		101	0.375
13	INU005	124	0.375
		126	0.576
		132	0.049
14	INU030	146	0.058
		148	0.058
		150	0.719
		152	0.165
15	INU055	210	0.670
		214	0.031
		218	0.196
		220	0.103
16	LEI004	85	0.625
		95	0.371
		107	0.004
17	REN105L03	227	0.098
		231	0.103
		233	0.085
		235	0.246
		241	0.469
18	REN162C04	200	0.357
		204	0.031
		206	0.433
		212	0.179
19	REN169D01	212	0.214
19	REN169D01	216	0.786
20	REN169O18	162	0.152
		164	0.089
		166	0.384
		168	0.308
		174	0.067
21	REN247M23	268	0.353
		270	0.089
		272	0.076
		274	0.018
		276	0.018
		278	0.446
22	REN54P11	226	0.567
		232	0.013
		234	0.411
		240	0.009
23	REN64E19	139	0.129
		147	0.022
		151	0.094
		153	0.107
		155	0.647
24	VGL0760	13	0.049
		18.2	0.134
		19.2	0.214
		20.2	0.071
		21.2	0.321
		22.2	0.188
		23.2	0.022
25	VGL0910	13	0.129
		17.1	0.129
		19.1	0.219
		20.1	0.357
		21.1	0.161
		22.1	0.004
26	VGL1063	9	0.004
		10	0.045
		12	0.754
		14	0.054
		15	0.098
		18	0.045
27	VGL1165	14	0.045
		15	0.152
		16	0.018
		17	0.089
		19	0.054
		22	0.210
		25	0.205
		28	0.183
		29	0.045
28	VGL1828	15	0.013
		16	0.004
		17	0.085
		19	0.884
		20	0.013
29	VGL2009	11	0.871
		12	0.049
		13	0.018
		14	0.036
		15	0.027
30	VGL2409	15	0.629
		16	0.196
		17	0.107
		18	0.067
31	VGL2918	13	0.129
		14	0.304
		18.3	0.022
		19.3	0.045
		20.3	0.170
		21.3	0.330
32	VGL3008	10	0.018
		14	0.022
		15	0.263
		16	0.134
		17	0.174
		18	0.183
		20	0.054
		21	0.152
33	VGL3235	14	0.531
		15	0.268
		16	0.188
		17	0.013

Standard genetic assessment based on 33 autosomal STR loci

Shiloh Shepherd

		N	Na	Ne	Ho	He	F
	Mean	112	4.909	2.720	0.586	0.567	-0.027
	SE		0.255	0.209	0.031	0.029	0.013

Standard genetic assessment based on 7 STRs in the DLA region

Shiloh Shepherd

		N	Na	Ne	Ho	He	F
	Mean	112	4.000	1.995	0.395	0.449	0.088
	SE		0.286	0.218	0.046	0.065	0.033

Standard genetic assessment for individual STR loci

Shiloh Shepherd

#	Locus	N	Na	Ne	Ho	He	F
1	AHT121	112	6	2.693	0.705	0.629	-0.122
2	AHT137	112	6	1.400	0.250	0.286	0.125
3	AHTH130	112	4	1.853	0.518	0.460	-0.125
4	AHTh171-A	112	4	3.440	0.777	0.709	-0.095
5	AHTh260	112	6	2.545	0.616	0.607	-0.015
6	AHTk211	112	5	2.381	0.625	0.580	-0.078
7	AHTk253	112	3	1.465	0.321	0.317	-0.013
8	C22.279	112	3	1.994	0.554	0.499	-0.110
9	FH2001	112	4	2.045	0.589	0.511	-0.153
10	FH2054	112	6	2.868	0.670	0.651	-0.028
11	FH2848	112	5	3.181	0.714	0.686	-0.042
12	INRA21	112	5	3.590	0.705	0.721	0.022
13	INU005	112	3	2.107	0.598	0.525	-0.139
14	INU030	112	4	1.816	0.491	0.449	-0.093
15	INU055	112	4	2.006	0.509	0.501	-0.015
16	LEI004	112	3	1.894	0.518	0.472	-0.097
17	REN105L03	112	5	3.253	0.688	0.693	0.007
18	REN162C04	112	4	2.874	0.696	0.652	-0.068
19	REN169D01	112	2	1.508	0.321	0.337	0.045
20	REN169O18	112	5	3.600	0.759	0.722	-0.051
21	REN247M23	112	6	2.958	0.688	0.662	-0.039
22	REN54P11	112	4	2.039	0.554	0.510	-0.086
23	REN64E19	112	5	2.190	0.518	0.543	0.047
24	VGL0760	112	7	4.754	0.848	0.790	-0.074
25	VGL0910	112	6	4.259	0.759	0.765	0.008
26	VGL1063	112	6	1.707	0.384	0.414	0.073
27	VGL1165	112	9	6.334	0.786	0.842	0.067
28	VGL1828	112	5	1.268	0.179	0.211	0.154
29	VGL2009	112	5	1.311	0.232	0.237	0.022
30	VGL2409	112	4	2.218	0.518	0.549	0.057
31	VGL2918	112	6	4.011	0.759	0.751	-0.011
32	VGL3008	112	8	5.623	0.848	0.822	-0.032
33	VGL3235	112	4	2.569	0.634	0.611	-0.038

Standard genetic assessment for 7 STRs in the DLA region

Shiloh Shepherd

#	Locus	N	Na	Ne	Ho	He	F
1	DLA I-3CCA	112	5	1.389	0.286	0.280	-0.021
2	DLA I-4ACA	112	5	2.565	0.509	0.610	0.166
3	DLA I-4BCT	112	4	2.656	0.527	0.623	0.155
4	DLA1131	112	3	2.304	0.482	0.566	0.148
5	5ACA	112	3	1.309	0.232	0.236	0.017
6	5ACT	112	4	2.425	0.482	0.588	0.179
7	5BCA	112	4	1.320	0.250	0.242	-0.032

Veterinary Genetics Laboratory

Statistics and Breed-wide Allele Frequency - Shiloh Shepherd

DLA Class I Haplotype Frequencies

DLA Class II Haplotype Frequencies

Allele Frequencies

Standard genetic assessment based on 33 autosomal STR loci

Standard genetic assessment based on 7 STRs in the DLA region

Standard genetic assessment for individual STR loci

Standard genetic assessment for 7 STRs in the DLA region

Contact the VGL

Statistics and Breed-wide Allele Frequency - Shiloh Shepherd

DLA Class I Haplotype Frequencies

DLA Class II Haplotype Frequencies

Allele Frequencies

Standard genetic assessment based on 33 autosomal STR loci

Standard genetic assessment based on 7 STRs in the DLA region

Standard genetic assessment for individual STR loci

Standard genetic assessment for 7 STRs in the DLA region

Contact the VGL

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