Statistics and Breed-wide Allele Frequency - Shiba Inu

Updated Jan 8, 2025

DLA Class I Haplotype Frequencies

DLA1 #	STR types	Shiba Inu (n=179)
1007	380 372 281 182	0.003
1019	380 373 287 185	0.003
1054	382 379 277 184	0.360
1081	395 379 289 178	0.006
1091	381 371 277 181	0.221
1109	381 379 291 186	0.028
1133	378 365 287 172	0.006
1160	386 369 289 176	0.011
1191	388 373 260 186	0.229
1192	376 373 281 182	0.017
1193	382 383 277 184	0.003
1194	385 369 291 178	0.008
1195	388 373 289 181	0.022
1196	390 372 291 180	0.017
1197	390 373 289 186	0.017
1198	392 371 277 184	0.047
1281	382 365 277 186	0.003

DLA Class II Haplotype Frequencies

DLA2 #	STR types	Shiba Inu (n=179)
2001	343 324 284	0.017
2006	339 325 280	0.003
2015	339 327 280	0.047
2016	339 323 284	0.003
2018	339 324 284	0.223
2032	339 323 280	0.006
2067	343 322 284	0.212
2071	339 322 286	0.003
2083	339 324 282	0.006
2097	343 327 276	0.008
2098	343 323 282	0.011
2105	341 325 276	0.017
2106	341 325 286	0.366
2107	343 322 286	0.003
2108	343 324 294	0.022
2109	345 322 276	0.028
2110	347 325 268	0.006
2111	351 324 276	0.017
2129	343 322 294	0.003

Allele Frequencies

#	Locus Name	Allele	Shiba Inu (n=180)
1	AHT121	90	0.003
		92	0.069
		96	0.003
		100	0.256
		102	0.233
		104	0.433
		106	0.003
2	AHT137	131	0.119
		133	0.197
		135	0.003
		137	0.025
		141	0.089
		145	0.094
		149	0.133
		151	0.114
		153	0.225
3	AHTH130	111	0.011
		115	0.003
		119	0.006
		121	0.839
		125	0.011
		129	0.003
		131	0.008
		133	0.036
		135	0.083
4	AHTh171-A	219	0.831
		221	0.003
		225	0.011
		227	0.133
		229	0.008
		233	0.014
5	AHTh260	236	0.100
		242	0.033
		244	0.558
		246	0.172
		248	0.064
		252	0.072
6	AHTk211	87	0.256
		89	0.186
		91	0.356
		93	0.022
		95	0.181
7	AHTk253	282	0.139
		286	0.131
		288	0.283
		290	0.292
		292	0.106
		294	0.050
8	C22.279	116	0.050
		118	0.044
		120	0.217
		122	0.006
		124	0.336
		126	0.111
		130	0.117
		132	0.119
9	FH2001	124	0.039
		132	0.094
		140	0.075
		144	0.358
		148	0.006
		152	0.142
		154	0.283
		156	0.003
10	FH2054	152	0.014
		156	0.117
		160	0.467
		164	0.161
		168	0.122
		172	0.075
		176	0.044
11	FH2848	230	0.017
		232	0.031
		234	0.008
		238	0.339
		242	0.603
		246	0.003
12	INRA21	95	0.133
		97	0.789
		99	0.019
		101	0.058
13	INU005	106	0.283
		124	0.439
		126	0.061
		130	0.125
		132	0.092
14	INU030	142	0.033
		144	0.453
		146	0.022
		148	0.044
		150	0.419
		152	0.028
15	INU055	210	0.394
		212	0.275
		214	0.136
		216	0.139
		220	0.047
		222	0.008
16	LEI004	85	0.378
		95	0.486
		97	0.136
17	REN105L03	227	0.094
		229	0.125
		231	0.025
		233	0.014
		235	0.064
		237	0.600
		239	0.064
		241	0.014
18	REN162C04	202	0.081
		204	0.017
		206	0.456
		208	0.003
		210	0.358
		212	0.086
19	REN169D01	202	0.328
		210	0.072
		212	0.192
		216	0.286
		218	0.122
20	REN169O18	162	0.031
		164	0.469
		166	0.158
		168	0.214
		170	0.125
		172	0.003
21	REN247M23	268	0.250
		270	0.522
		272	0.131
		276	0.008
		278	0.089
22	REN54P11	226	0.011
		228	0.169
		230	0.075
		232	0.081
		236	0.017
		238	0.208
		240	0.236
		242	0.203
23	REN64E19	139	0.003
		141	0.008
		145	0.158
		147	0.056
		149	0.356
		151	0.153
		153	0.103
		155	0.133
		157	0.031
24	VGL0760	13	0.583
		14	0.172
		15	0.019
		16	0.025
		17	0.117
		19	0.008
		21.2	0.053
		22.2	0.008
		23.2	0.011
		24.2	0.003
25	VGL0910	15.1	0.003
		16.1	0.272
		17.1	0.008
		18.1	0.186
		19.1	0.453
		20.1	0.061
		21.1	0.011
		22.1	0.006
26	VGL1063	10	0.008
		12	0.014
		13	0.033
		14	0.728
		15	0.089
		16	0.028
		17	0.008
		18	0.083
		19	0.006
		20	0.003
27	VGL1165	15	0.006
		16	0.003
		18	0.022
		21	0.078
		26	0.064
		27	0.103
		28	0.131
		30	0.122
		31	0.461
		32	0.011
28	VGL1828	14	0.031
		15	0.283
		16	0.053
		18	0.025
		19	0.150
		20	0.031
		20.3	0.025
		21	0.300
		22	0.100
		23	0.003
29	VGL2009	9	0.033
		11	0.006
		12	0.133
		13	0.586
		14	0.153
		15	0.086
		16	0.003
30	VGL2409	13	0.008
		13.3	0.031
		14	0.003
		14.3	0.014
		15	0.194
		16	0.367
		17	0.092
		18	0.236
		19	0.056
31	VGL2918	12	0.061
		13	0.147
		14	0.203
		15	0.031
		16	0.008
		17.3	0.022
		18.3	0.067
		19.3	0.358
		20.3	0.008
		21.3	0.014
		22.3	0.081
32	VGL3008	12	0.194
		14	0.203
		15	0.089
		16	0.014
		17	0.058
		18	0.386
		19	0.019
		20	0.036
33	VGL3235	12	0.244
		13	0.292
		14	0.100
		15	0.031
		16	0.008
		17	0.211
		18	0.075
		19	0.039

Standard genetic assessment based on 33 autosomal STR loci

Shiba Inu

		N	Na	Ne	Ho	He	F
	Mean	180	7.242	3.472	0.663	0.667	0.008
	SE		0.335	0.212	0.026	0.025	0.007

Standard genetic assessment based on 7 STRs in the DLA region

Shiba Inu

		N	Na	Ne	Ho	He	F
	Mean	180	7.286	3.122	0.651	0.671	0.027
	SE		0.720	0.177	0.018	0.022	0.016

Standard genetic assessment for individual STR loci

Shiba Inu

#	Locus	N	Na	Ne	Ho	He	F
1	AHT121	180	7	3.201	0.672	0.688	0.022
2	AHT137	180	9	6.579	0.822	0.848	0.030
3	AHTH130	180	9	1.404	0.256	0.288	0.112
4	AHTh171-A	180	6	1.412	0.300	0.292	-0.027
5	AHTh260	180	6	2.764	0.633	0.638	0.008
6	AHTk211	180	5	3.854	0.761	0.741	-0.028
7	AHTk253	180	6	4.644	0.778	0.785	0.009
8	C22.279	180	8	4.887	0.800	0.795	-0.006
9	FH2001	180	8	4.084	0.778	0.755	-0.030
10	FH2054	180	7	3.570	0.689	0.720	0.043
11	FH2848	180	6	2.086	0.489	0.521	0.061
12	INRA21	180	4	1.553	0.350	0.356	0.017
13	INU005	180	5	3.326	0.717	0.699	-0.025
14	INU030	180	6	2.595	0.633	0.615	-0.030
15	INU055	180	6	3.686	0.722	0.729	0.009
16	LEI004	180	3	2.515	0.589	0.602	0.023
17	REN105L03	180	8	2.540	0.594	0.606	0.020
18	REN162C04	180	6	2.856	0.667	0.650	-0.026
19	REN169D01	180	5	4.062	0.783	0.754	-0.039
20	REN169O18	180	6	3.249	0.667	0.692	0.037
21	REN247M23	180	5	2.776	0.583	0.640	0.088
22	REN54P11	180	8	5.510	0.789	0.819	0.036
23	REN64E19	180	9	4.825	0.839	0.793	-0.058
24	VGL0760	180	10	2.580	0.606	0.612	0.011
25	VGL0910	180	8	3.147	0.683	0.682	-0.002
26	VGL1063	180	10	1.829	0.444	0.453	0.019
27	VGL1165	180	10	3.760	0.767	0.734	-0.044
28	VGL1828	180	10	4.792	0.756	0.791	0.045
29	VGL2009	180	7	2.543	0.600	0.607	0.011
30	VGL2409	180	9	4.155	0.739	0.759	0.027
31	VGL2918	180	11	4.816	0.839	0.792	-0.059
32	VGL3008	180	8	4.146	0.756	0.759	0.004
33	VGL3235	180	8	4.819	0.794	0.792	-0.002

Standard genetic assessment for 7 STRs in the DLA region

Shiba Inu

#	Locus	N	Na	Ne	Ho	He	F
1	DLA I-3CCA	180	11	3.797	0.689	0.737	0.065
2	DLA I-4ACA	180	7	3.219	0.670	0.689	0.028
3	DLA I-4BCT	180	6	2.171	0.567	0.539	-0.051
4	DLA1131	180	9	3.272	0.694	0.694	-0.000
5	5ACA	180	6	3.239	0.683	0.691	0.011
6	5ACT	180	5	3.335	0.667	0.700	0.048
7	5BCA	180	7	2.818	0.589	0.645	0.087

Veterinary Genetics Laboratory

Statistics and Breed-wide Allele Frequency - Shiba Inu

DLA Class I Haplotype Frequencies

DLA Class II Haplotype Frequencies

Allele Frequencies

Standard genetic assessment based on 33 autosomal STR loci

Standard genetic assessment based on 7 STRs in the DLA region

Standard genetic assessment for individual STR loci

Standard genetic assessment for 7 STRs in the DLA region

Contact the VGL

Statistics and Breed-wide Allele Frequency - Shiba Inu

DLA Class I Haplotype Frequencies

DLA Class II Haplotype Frequencies

Allele Frequencies

Standard genetic assessment based on 33 autosomal STR loci

Standard genetic assessment based on 7 STRs in the DLA region

Standard genetic assessment for individual STR loci

Standard genetic assessment for 7 STRs in the DLA region

Contact the VGL

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