Statistics and Breed-wide Allele Frequency - Shiba Inu

Updated Feb 25, 2025

DLA Class I Haplotype Frequencies

DLA1 #	STR types	Shiba Inu (n=183)
1007	380 372 281 182	0.003
1019	380 373 287 185	0.003
1054	382 379 277 184	0.361
1081	395 379 289 178	0.005
1091	381 371 277 181	0.219
1109	381 379 291 186	0.027
1133	378 365 287 172	0.005
1160	386 369 289 176	0.011
1191	388 373 260 186	0.235
1192	376 373 281 182	0.016
1193	382 383 277 184	0.003
1194	385 369 291 178	0.008
1195	388 373 289 181	0.022
1196	390 372 291 180	0.016
1197	390 373 289 186	0.016
1198	392 371 277 184	0.046
1281	382 365 277 186	0.003

DLA Class II Haplotype Frequencies

DLA2 #	STR types	Shiba Inu (n=183)
2001	343 324 284	0.016
2006	339 325 280	0.003
2015	339 327 280	0.046
2016	339 323 284	0.003
2018	339 324 284	0.230
2032	339 323 280	0.005
2067	343 322 284	0.210
2071	339 322 286	0.003
2083	339 324 282	0.005
2097	343 327 276	0.008
2098	343 323 282	0.011
2105	341 325 276	0.016
2106	341 325 286	0.366
2107	343 322 286	0.003
2108	343 324 294	0.022
2109	345 322 276	0.027
2110	347 325 268	0.005
2111	351 324 276	0.016
2129	343 322 294	0.003

Allele Frequencies

#	Locus Name	Allele	Shiba Inu (n=183)
1	AHT121	90	0.003
		92	0.068
		96	0.003
		100	0.260
		102	0.235
		104	0.429
		106	0.003
2	AHT137	131	0.117
		133	0.197
		135	0.003
		137	0.025
		141	0.087
		145	0.093
		149	0.131
		151	0.115
		153	0.232
3	AHTH130	111	0.011
		115	0.003
		119	0.005
		121	0.839
		125	0.014
		129	0.003
		131	0.008
		133	0.036
		135	0.082
4	AHTh171-A	219	0.831
		221	0.003
		225	0.011
		227	0.134
		229	0.008
		233	0.014
5	AHTh260	236	0.098
		242	0.033
		244	0.557
		246	0.175
		248	0.063
		252	0.074
6	AHTk211	87	0.254
		89	0.183
		91	0.363
		93	0.022
		95	0.178
7	AHTk253	282	0.145
		286	0.128
		288	0.284
		290	0.287
		292	0.107
		294	0.049
8	C22.279	116	0.049
		118	0.044
		120	0.221
		122	0.005
		124	0.333
		126	0.109
		130	0.115
		132	0.123
9	FH2001	124	0.038
		132	0.098
		140	0.074
		144	0.361
		148	0.005
		152	0.139
		154	0.281
		156	0.003
10	FH2054	152	0.014
		156	0.115
		160	0.464
		164	0.167
		168	0.120
		172	0.074
		176	0.046
11	FH2848	230	0.016
		232	0.036
		234	0.008
		238	0.333
		242	0.604
		246	0.003
12	INRA21	95	0.137
		97	0.784
		99	0.019
		101	0.060
13	INU005	106	0.287
		124	0.440
		126	0.060
		130	0.123
		132	0.090
14	INU030	142	0.033
		144	0.451
		146	0.022
		148	0.046
		150	0.421
		152	0.027
15	INU055	210	0.402
		212	0.270
		214	0.137
		216	0.137
		220	0.046
		222	0.008
16	LEI004	85	0.383
		95	0.481
		97	0.137
17	REN105L03	227	0.093
		229	0.126
		231	0.025
		233	0.014
		235	0.066
		237	0.601
		239	0.063
		241	0.014
18	REN162C04	202	0.082
		204	0.016
		206	0.459
		208	0.003
		210	0.355
		212	0.085
19	REN169D01	202	0.322
		210	0.077
		212	0.197
		216	0.284
		218	0.120
20	REN169O18	162	0.030
		164	0.478
		166	0.156
		168	0.210
		170	0.123
		172	0.003
21	REN247M23	268	0.246
		270	0.530
		272	0.128
		276	0.008
		278	0.087
22	REN54P11	226	0.011
		228	0.167
		230	0.079
		232	0.082
		236	0.016
		238	0.208
		240	0.235
		242	0.202
23	REN64E19	139	0.003
		141	0.008
		145	0.161
		147	0.055
		149	0.355
		151	0.150
		153	0.101
		155	0.137
		157	0.030
24	VGL0760	13	0.582
		14	0.172
		15	0.019
		16	0.025
		17	0.115
		19	0.008
		21.2	0.052
		22.2	0.011
		23.2	0.014
		24.2	0.003
25	VGL0910	15.1	0.003
		16.1	0.273
		17.1	0.008
		18.1	0.186
		19.1	0.451
		20.1	0.060
		21.1	0.011
		22.1	0.008
26	VGL1063	10	0.008
		12	0.014
		13	0.036
		14	0.730
		15	0.087
		16	0.027
		17	0.008
		18	0.082
		19	0.005
		20	0.003
27	VGL1165	15	0.005
		16	0.003
		18	0.022
		21	0.077
		26	0.063
		27	0.101
		28	0.128
		30	0.128
		31	0.462
		32	0.011
28	VGL1828	14	0.030
		15	0.287
		16	0.052
		18	0.025
		19	0.150
		20	0.030
		20.3	0.027
		21	0.298
		22	0.098
		23	0.003
29	VGL2009	9	0.033
		11	0.005
		12	0.131
		13	0.590
		14	0.153
		15	0.085
		16	0.003
30	VGL2409	13	0.008
		13.3	0.030
		14	0.003
		14.3	0.014
		15	0.191
		16	0.369
		17	0.090
		18	0.238
		19	0.057
31	VGL2918	12	0.060
		13	0.148
		14	0.199
		15	0.030
		16	0.008
		17.3	0.022
		18.3	0.066
		19.3	0.361
		20.3	0.008
		21.3	0.014
		22.3	0.085
32	VGL3008	12	0.199
		14	0.208
		15	0.087
		16	0.014
		17	0.057
		18	0.380
		19	0.019
		20	0.036
33	VGL3235	12	0.243
		13	0.295
		14	0.098
		15	0.030
		16	0.008
		17	0.208
		18	0.079
		19	0.038

Standard genetic assessment based on 33 autosomal STR loci

Shiba Inu

		N	Na	Ne	Ho	He	F
	Mean	183	7.242	3.466	0.663	0.667	0.007
	SE		0.335	0.211	0.026	0.025	0.007

Standard genetic assessment based on 7 STRs in the DLA region

Shiba Inu

		N	Na	Ne	Ho	He	F
	Mean	183	7.286	3.115	0.657	0.670	0.018
	SE		0.720	0.176	0.018	0.022	0.016

Standard genetic assessment for individual STR loci

Shiba Inu

#	Locus	N	Na	Ne	Ho	He	F
1	AHT121	183	7	3.213	0.678	0.689	0.016
2	AHT137	183	9	6.507	0.820	0.846	0.031
3	AHTH130	183	9	1.405	0.257	0.288	0.108
4	AHTh171-A	183	6	1.412	0.301	0.292	-0.030
5	AHTh260	183	6	2.767	0.639	0.639	-0.001
6	AHTk211	183	5	3.815	0.754	0.738	-0.022
7	AHTk253	183	6	4.667	0.776	0.786	0.012
8	C22.279	183	8	4.886	0.798	0.795	-0.003
9	FH2001	183	8	4.077	0.781	0.755	-0.035
10	FH2054	183	7	3.585	0.689	0.721	0.045
11	FH2848	183	6	2.095	0.492	0.523	0.059
12	INRA21	183	4	1.569	0.361	0.362	0.005
13	INU005	183	5	3.304	0.710	0.697	-0.019
14	INU030	183	6	2.599	0.639	0.615	-0.039
15	INU055	183	6	3.649	0.716	0.726	0.014
16	LEI004	183	3	2.524	0.590	0.604	0.023
17	REN105L03	183	8	2.532	0.596	0.605	0.016
18	REN162C04	183	6	2.849	0.667	0.649	-0.027
19	REN169D01	183	5	4.104	0.787	0.756	-0.040
20	REN169O18	183	6	3.193	0.656	0.687	0.045
21	REN247M23	183	5	2.735	0.574	0.634	0.096
22	REN54P11	183	8	5.544	0.792	0.820	0.033
23	REN64E19	183	9	4.818	0.836	0.792	-0.055
24	VGL0760	183	10	2.594	0.607	0.614	0.013
25	VGL0910	183	8	3.162	0.689	0.684	-0.007
26	VGL1063	183	10	1.822	0.443	0.451	0.019
27	VGL1165	183	10	3.747	0.760	0.733	-0.036
28	VGL1828	183	10	4.782	0.760	0.791	0.040
29	VGL2009	183	7	2.518	0.596	0.603	0.012
30	VGL2409	183	9	4.137	0.738	0.758	0.027
31	VGL2918	183	11	4.798	0.836	0.792	-0.056
32	VGL3008	183	8	4.169	0.760	0.760	0.001
33	VGL3235	183	8	4.814	0.798	0.792	-0.007

Standard genetic assessment for 7 STRs in the DLA region

Shiba Inu

#	Locus	N	Na	Ne	Ho	He	F
1	DLA I-3CCA	183	11	3.784	0.694	0.736	0.057
2	DLA I-4ACA	183	7	3.212	0.678	0.689	0.016
3	DLA I-4BCT	183	6	2.175	0.574	0.540	-0.062
4	DLA1131	183	9	3.268	0.699	0.694	-0.008
5	5ACA	183	6	3.235	0.689	0.691	0.003
6	5ACT	183	5	3.329	0.672	0.700	0.039
7	5BCA	183	7	2.799	0.590	0.643	0.082

Veterinary Genetics Laboratory

Statistics and Breed-wide Allele Frequency - Shiba Inu

DLA Class I Haplotype Frequencies

DLA Class II Haplotype Frequencies

Allele Frequencies

Standard genetic assessment based on 33 autosomal STR loci

Standard genetic assessment based on 7 STRs in the DLA region

Standard genetic assessment for individual STR loci

Standard genetic assessment for 7 STRs in the DLA region

Contact the VGL

Statistics and Breed-wide Allele Frequency - Shiba Inu

DLA Class I Haplotype Frequencies

DLA Class II Haplotype Frequencies

Allele Frequencies

Standard genetic assessment based on 33 autosomal STR loci

Standard genetic assessment based on 7 STRs in the DLA region

Standard genetic assessment for individual STR loci

Standard genetic assessment for 7 STRs in the DLA region

Contact the VGL

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