Statistics and Breed-wide Allele Frequency - Great Dane

Updated Nov 21, 2024

DLA Class I Haplotype Frequencies

DLA1 #	STR types	Great Dane (n=93)
1006	387 375 293 180	0.011
1009	382 377 277 184	0.081
1016	382 371 277 178	0.204
1030	380 373 293 178	0.269
1066	376 375 277 178	0.210
1068	380 373 287 181	0.011
1091	381 371 277 181	0.048
1094	395 375 277 176	0.032
1129	382 371 277 181	0.075
1273	376 375 277 176	0.005
1274	385 371 277 181	0.005
1275	387 371 277 181	0.016
1276	392 373 281 182	0.016
1277	394 369 277 183	0.005
1278	399 373 277 181	0.011

DLA Class II Haplotype Frequencies

DLA2 #	STR types	Great Dane (n=93)
2003	343 324 282	0.005
2005	339 322 280	0.048
2007	351 327 280	0.011
2014	339 322 284	0.043
2022	339 327 282	0.081
2023	341 323 282	0.269
2033	339 323 282	0.151
2046	339 329 280	0.355
2053	343 324 280	0.011
2086	339 329 284	0.011
2136	353 324 280	0.016

Allele Frequencies

#	Locus Name	Allele	Great Dane (n=93)
1	AHT121	80	0.016
		94	0.070
		98	0.312
		100	0.005
		102	0.027
		104	0.005
		106	0.108
		108	0.011
		110	0.048
		112	0.027
		114	0.263
		118	0.108
2	AHT137	129	0.005
		131	0.124
		133	0.027
		137	0.075
		141	0.183
		147	0.581
		151	0.005
3	AHTH130	117	0.016
		119	0.129
		121	0.161
		123	0.032
		125	0.005
		127	0.409
		131	0.065
		133	0.183
4	AHTh171-A	219	0.328
		221	0.016
		225	0.027
		227	0.161
		229	0.199
		233	0.140
		235	0.124
		237	0.005
5	AHTh260	238	0.011
		242	0.022
		244	0.280
		246	0.575
		248	0.065
		250	0.043
		254	0.005
6	AHTk211	87	0.016
		89	0.296
		91	0.398
		95	0.290
7	AHTk253	286	0.220
		288	0.495
		290	0.263
		292	0.022
8	C22.279	116	0.038
		118	0.613
		120	0.081
		122	0.038
		124	0.231
9	FH2001	128	0.005
		132	0.215
		136	0.038
		144	0.543
		148	0.145
		152	0.043
		158	0.011
10	FH2054	148	0.016
		152	0.005
		156	0.452
		160	0.242
		164	0.167
		168	0.070
		172	0.022
		176	0.027
11	FH2848	232	0.043
		234	0.688
		238	0.188
		240	0.065
		242	0.016
12	INRA21	91	0.038
		95	0.387
		99	0.344
		101	0.210
		103	0.005
		105	0.016
13	INU005	110	0.016
		122	0.065
		124	0.328
		126	0.575
		132	0.016
14	INU030	144	0.038
		146	0.005
		150	0.677
		152	0.280
15	INU055	204	0.022
		208	0.075
		210	0.145
		212	0.296
		216	0.323
		218	0.140
16	LEI004	85	0.134
		95	0.720
		97	0.097
		107	0.011
		111	0.038
17	REN105L03	227	0.059
		231	0.210
		233	0.070
		235	0.516
		241	0.059
		245	0.086
18	REN162C04	192	0.065
		194	0.005
		202	0.258
		204	0.086
		206	0.129
		208	0.457
19	REN169D01	202	0.027
		212	0.226
		216	0.484
		220	0.263
20	REN169O18	164	0.032
		166	0.108
		168	0.457
		170	0.398
		172	0.005
21	REN247M23	268	0.177
		272	0.817
		278	0.005
22	REN54P11	222	0.005
		226	0.156
		228	0.118
		232	0.038
		234	0.204
		238	0.478
23	REN64E19	139	0.156
		143	0.124
		145	0.124
		147	0.134
		149	0.376
		153	0.086
24	VGL0760	12	0.156
		13	0.016
		19.2	0.065
		20.2	0.043
		21.2	0.032
		22.2	0.177
		23.2	0.242
		24.2	0.247
		25.2	0.022
25	VGL0910	12	0.016
		14	0.043
		17.1	0.011
		18.1	0.016
		19	0.005
		19.1	0.054
		20.1	0.323
		21.1	0.392
		22.1	0.091
		23.1	0.032
		24.1	0.016
26	VGL1063	12	0.005
		13	0.059
		14	0.387
		15	0.441
		16	0.043
		17	0.043
		18	0.011
		19	0.011
27	VGL1165	15	0.005
		18	0.038
		19	0.032
		21	0.016
		22	0.005
		25	0.005
		26	0.167
		27	0.581
		28	0.027
		29	0.113
		30	0.005
		31	0.005
28	VGL1828	14	0.022
		15	0.070
		16	0.392
		17	0.059
		19	0.140
		20	0.134
		21	0.027
		22	0.156
29	VGL2009	9	0.269
		13	0.011
		14	0.027
		15	0.656
		16	0.038
30	VGL2409	13	0.194
		14	0.005
		15	0.102
		16	0.054
		17	0.333
		18	0.274
		19	0.038
31	VGL2918	11	0.011
		12	0.016
		13	0.677
		14	0.102
		15	0.027
		16	0.038
		18.3	0.048
		19.3	0.043
		21.3	0.038
32	VGL3008	13	0.070
		14	0.032
		15	0.016
		16	0.129
		17	0.290
		18	0.301
		19	0.081
		20	0.038
		21	0.043
33	VGL3235	12	0.285
		13	0.048
		14	0.591
		15	0.011
		16	0.005
		17	0.016
		18	0.043

Standard genetic assessment based on 33 autosomal STR loci

Great Dane

		N	Na	Ne	Ho	He	F
	Mean	93	6.727	3.138	0.599	0.644	0.073
	SE		0.386	0.181	0.024	0.021	0.018

Standard genetic assessment based on 7 STRs in the DLA region

Great Dane

		N	Na	Ne	Ho	He	F
	Mean	93	5.571	2.599	0.555	0.581	0.041
	SE		0.805	0.297	0.040	0.044	0.022

Standard genetic assessment for individual STR loci

Great Dane

#	Locus	N	Na	Ne	Ho	He	F
1	AHT121	93	12	5.028	0.849	0.801	-0.060
2	AHT137	93	7	2.549	0.505	0.608	0.168
3	AHTH130	93	8	4.024	0.538	0.751	0.285
4	AHTh171-A	93	8	4.785	0.710	0.791	0.103
5	AHTh260	93	7	2.406	0.516	0.584	0.117
6	AHTk211	93	4	3.028	0.677	0.670	-0.011
7	AHTk253	93	4	2.754	0.645	0.637	-0.013
8	C22.279	93	5	2.281	0.548	0.562	0.023
9	FH2001	93	7	2.735	0.548	0.634	0.136
10	FH2054	93	8	3.371	0.731	0.703	-0.040
11	FH2848	93	5	1.941	0.387	0.485	0.201
12	INRA21	93	6	3.186	0.677	0.686	0.013
13	INU005	93	5	2.256	0.473	0.557	0.150
14	INU030	93	4	1.857	0.527	0.461	-0.142
15	INU055	93	6	4.198	0.774	0.762	-0.016
16	LEI004	93	5	1.825	0.355	0.452	0.215
17	REN105L03	93	6	3.034	0.581	0.670	0.134
18	REN162C04	93	6	3.293	0.710	0.696	-0.019
19	REN169D01	93	4	2.815	0.441	0.645	0.316
20	REN169O18	93	5	2.633	0.634	0.620	-0.023
21	REN247M23	93	3	1.430	0.258	0.301	0.142
22	REN54P11	93	6	3.221	0.645	0.690	0.064
23	REN64E19	93	6	4.505	0.710	0.778	0.088
24	VGL0760	93	9	5.457	0.785	0.817	0.039
25	VGL0910	93	11	3.661	0.634	0.727	0.127
26	VGL1063	93	8	2.844	0.473	0.648	0.270
27	VGL1165	93	12	2.623	0.602	0.619	0.027
28	VGL1828	93	8	4.434	0.753	0.774	0.028
29	VGL2009	93	5	1.981	0.484	0.495	0.023
30	VGL2409	93	7	4.192	0.742	0.761	0.026
31	VGL2918	93	9	2.094	0.484	0.523	0.074
32	VGL3008	93	9	4.818	0.806	0.792	-0.018
33	VGL3235	93	7	2.296	0.570	0.564	-0.010

Standard genetic assessment for 7 STRs in the DLA region

Great Dane

#	Locus	N	Na	Ne	Ho	He	F
1	DLA I-3CCA	93	10	3.865	0.645	0.741	0.130
2	DLA I-4ACA	93	5	3.458	0.667	0.711	0.062
3	DLA I-4BCT	93	4	1.787	0.430	0.440	0.023
4	DLA1131	93	7	1.991	0.441	0.498	0.114
5	5ACA	93	5	1.830	0.452	0.454	0.004
6	5ACT	93	5	3.056	0.688	0.673	-0.023
7	5BCA	93	3	2.209	0.559	0.547	-0.022

Veterinary Genetics Laboratory

Statistics and Breed-wide Allele Frequency - Great Dane

DLA Class I Haplotype Frequencies

DLA Class II Haplotype Frequencies

Allele Frequencies

Standard genetic assessment based on 33 autosomal STR loci

Standard genetic assessment based on 7 STRs in the DLA region

Standard genetic assessment for individual STR loci

Standard genetic assessment for 7 STRs in the DLA region

Contact the VGL

Statistics and Breed-wide Allele Frequency - Great Dane

DLA Class I Haplotype Frequencies

DLA Class II Haplotype Frequencies

Allele Frequencies

Standard genetic assessment based on 33 autosomal STR loci

Standard genetic assessment based on 7 STRs in the DLA region

Standard genetic assessment for individual STR loci

Standard genetic assessment for 7 STRs in the DLA region

Contact the VGL

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