Statistics and Breed-wide Allele Frequency - Border Collie

Updated Dec 3, 2024

DLA Class I Haplotype Frequencies

DLA1 #	STR types	Border Collie (n=78)
1008	386 373 289 182	0.006
1011	376 365 281 180	0.064
1012	388 369 289 188	0.051
1014	375 373 287 178	0.071
1029	380 365 281 182	0.006
1030	380 373 293 178	0.006
1045	376 371 277 186	0.147
1052	380 372 289 184	0.013
1063	382 373 289 182	0.006
1066	376 375 277 178	0.006
1068	380 373 287 181	0.205
1092	376 379 277 181	0.006
1104	386 373 289 186	0.167
1222	386 379 277 181	0.013
1236	376 379 289 181	0.212
1237	376 379 277 178	0.006
1238	376 371 277 184	0.006
1239	376 371 277 181	0.006

DLA Class II Haplotype Frequencies

DLA2 #	STR types	Border Collie (n=78)
2001	343 324 284	0.141
2002	343 327 280	0.160
2003	343 324 282	0.051
2005	339 322 280	0.013
2017	343 322 280	0.173
2022	339 327 282	0.006
2023	341 323 282	0.006
2031	339 322 282	0.006
2033	339 323 282	0.006
2037	341 327 280	0.071
2039	345 327 276	0.135
2040	345 327 280	0.006
2052	345 321 280	0.006
2053	343 324 280	0.064
2065	339 325 286	0.006
2067	343 322 284	0.064
2075	341 327 282	0.013
2096	351 322 280	0.032
2125	351 322 286	0.032
2141	343 331 280	0.006

Allele Frequencies

#	Locus Name	Allele	Border Collie (n=83)
1	AHT121	92	0.073
		94	0.098
		98	0.049
		100	0.110
		102	0.220
		104	0.043
		106	0.244
		108	0.122
		110	0.018
		112	0.024
2	AHT137	131	0.247
		137	0.060
		141	0.018
		143	0.006
		145	0.404
		147	0.066
		149	0.102
		151	0.012
		153	0.084
3	AHTH130	117	0.006
		119	0.024
		121	0.331
		123	0.006
		125	0.024
		127	0.114
		129	0.054
		131	0.241
		133	0.060
		135	0.139
4	AHTh171-A	219	0.018
		221	0.012
		225	0.128
		227	0.012
		229	0.116
		231	0.006
		233	0.439
		235	0.030
		237	0.232
		241	0.006
5	AHTh260	238	0.144
		240	0.244
		242	0.150
		244	0.013
		246	0.394
		248	0.044
		252	0.006
		254	0.006
6	AHTk211	87	0.110
		89	0.098
		91	0.732
		93	0.018
		95	0.012
		97	0.030
7	AHTk253	284	0.116
		286	0.085
		288	0.384
		290	0.012
		292	0.402
8	C22.279	114	0.049
		116	0.244
		118	0.604
		120	0.012
		124	0.061
		126	0.018
		128	0.012
9	FH2001	128	0.055
		132	0.409
		136	0.049
		140	0.012
		144	0.409
		148	0.067
10	FH2054	144	0.006
		148	0.104
		152	0.445
		156	0.116
		160	0.238
		164	0.030
		168	0.049
		172	0.006
		176	0.006
11	FH2848	232	0.025
		234	0.156
		236	0.019
		238	0.094
		240	0.219
		242	0.263
		244	0.225
12	INRA21	91	0.096
		95	0.741
		97	0.078
		101	0.078
		103	0.006
13	INU005	110	0.110
		120	0.006
		122	0.006
		124	0.335
		126	0.104
		128	0.018
		130	0.006
		132	0.415
14	INU030	144	0.207
		148	0.037
		150	0.341
		152	0.299
		154	0.110
		156	0.006
15	INU055	208	0.175
		210	0.735
		212	0.018
		214	0.018
		216	0.030
		218	0.024
16	LEI004	85	0.238
		95	0.561
		107	0.177
		111	0.024
17	REN105L03	227	0.038
		231	0.038
		233	0.275
		235	0.131
		237	0.063
		239	0.163
		241	0.288
		245	0.006
18	REN162C04	200	0.104
		202	0.396
		204	0.274
		206	0.073
		208	0.152
19	REN169D01	202	0.144
		210	0.125
		212	0.094
		214	0.006
		216	0.456
		218	0.150
		220	0.019
		224	0.006
20	REN169O18	160	0.019
		162	0.062
		164	0.099
		166	0.019
		168	0.494
		170	0.309
21	REN247M23	266	0.150
		268	0.225
		270	0.200
		272	0.213
		276	0.069
		278	0.144
22	REN54P11	222	0.012
		226	0.189
		228	0.030
		232	0.463
		234	0.122
		236	0.159
		238	0.024
23	REN64E19	139	0.012
		143	0.024
		145	0.428
		147	0.247
		149	0.175
		153	0.114
24	VGL0760	12	0.055
		14	0.262
		15	0.018
		18.2	0.049
		20.2	0.152
		21.2	0.360
		22.2	0.018
		23.2	0.079
		24.2	0.006
25	VGL0910	16.1	0.030
		17.1	0.457
		18.1	0.140
		19.1	0.201
		20.1	0.079
		21.1	0.024
		22.1	0.055
		23.1	0.006
		24.1	0.006
26	VGL1063	8	0.043
		9	0.610
		11	0.006
		12	0.037
		13	0.043
		14	0.104
		15	0.085
		17	0.012
		18	0.006
		19	0.006
		20	0.030
		21	0.012
		22	0.006
27	VGL1165	14	0.012
		15	0.006
		17	0.012
		18	0.006
		20	0.335
		21	0.195
		22	0.012
		23	0.006
		24	0.006
		25	0.012
		26	0.110
		27	0.055
		28	0.110
		29	0.024
		30	0.091
		31	0.006
28	VGL1828	15	0.128
		16	0.098
		17	0.305
		19	0.079
		20	0.030
		21	0.207
		22	0.152
29	VGL2009	9	0.409
		10	0.030
		11	0.018
		12	0.018
		13	0.189
		14	0.067
		15	0.262
		16	0.006
30	VGL2409	13	0.061
		14	0.402
		15	0.043
		16	0.030
		17	0.311
		18	0.091
		19	0.037
		20	0.024
31	VGL2918	12	0.250
		13	0.152
		14	0.213
		15	0.122
		16	0.018
		17.3	0.146
		18.3	0.085
		19.3	0.006
		20.3	0.006
32	VGL3008	10	0.012
		14	0.061
		15	0.079
		16	0.268
		17	0.140
		18	0.201
		19	0.049
		20	0.110
		21	0.006
		22	0.055
		23	0.012
		24	0.006
33	VGL3235	12	0.146
		13	0.018
		14	0.268
		15	0.079
		16	0.128
		17	0.085
		18	0.268
		19	0.006

Standard genetic assessment based on 33 autosomal STR loci

Border Collie

		N	Na	Ne	Ho	He	F
	Mean	83	7.909	3.842	0.682	0.707	0.035
	SE		0.425	0.215	0.019	0.019	0.011

Standard genetic assessment based on 7 STRs in the DLA region

Border Collie

		N	Na	Ne	Ho	He	F
	Mean	83	6.143	3.009	0.666	0.661	-0.010
	SE		0.315	0.142	0.021	0.020	0.017

Standard genetic assessment for individual STR loci

Border Collie

#	Locus	N	Na	Ne	Ho	He	F
1	AHT121	83	10	6.468	0.805	0.845	0.048
2	AHT137	83	9	3.999	0.699	0.750	0.068
3	AHTH130	83	10	4.809	0.795	0.792	-0.004
4	AHTh171-A	83	10	3.599	0.720	0.722	0.004
5	AHTh260	83	8	3.850	0.738	0.740	0.004
6	AHTk211	83	6	1.791	0.366	0.442	0.172
7	AHTk253	83	5	3.027	0.659	0.670	0.017
8	C22.279	83	7	2.322	0.585	0.569	-0.028
9	FH2001	83	6	2.908	0.634	0.656	0.034
10	FH2054	83	9	3.543	0.646	0.718	0.099
11	FH2848	83	7	4.961	0.850	0.798	-0.065
12	INRA21	83	5	1.752	0.410	0.429	0.046
13	INU005	83	8	3.251	0.671	0.692	0.031
14	INU030	83	6	3.813	0.793	0.738	-0.074
15	INU055	83	6	1.746	0.470	0.427	-0.100
16	LEI004	83	4	2.481	0.622	0.597	-0.042
17	REN105L03	83	8	4.792	0.688	0.791	0.131
18	REN162C04	83	5	3.680	0.634	0.728	0.129
19	REN169D01	83	8	3.621	0.738	0.724	-0.019
20	REN169O18	83	6	2.830	0.605	0.647	0.064
21	REN247M23	83	6	5.444	0.850	0.816	-0.041
22	REN54P11	83	7	3.423	0.671	0.708	0.052
23	REN64E19	83	6	3.469	0.711	0.712	0.001
24	VGL0760	83	9	4.277	0.744	0.766	0.029
25	VGL0910	83	9	3.569	0.707	0.720	0.017
26	VGL1063	83	13	2.524	0.561	0.604	0.071
27	VGL1165	83	16	5.337	0.768	0.813	0.055
28	VGL1828	83	7	5.200	0.695	0.808	0.139
29	VGL2009	83	8	3.603	0.646	0.722	0.105
30	VGL2409	83	8	3.631	0.744	0.725	-0.027
31	VGL2918	83	9	5.706	0.732	0.825	0.113
32	VGL3008	83	12	6.252	0.817	0.840	0.027
33	VGL3235	83	8	5.109	0.732	0.804	0.090

Standard genetic assessment for 7 STRs in the DLA region

Border Collie

#	Locus	N	Na	Ne	Ho	He	F
1	DLA I-3CCA	83	6	3.293	0.709	0.696	-0.018
2	DLA I-4ACA	83	7	3.290	0.732	0.696	-0.051
3	DLA I-4BCT	83	6	3.169	0.720	0.684	-0.051
4	DLA1131	83	7	3.185	0.659	0.686	0.040
5	5ACA	83	5	2.137	0.563	0.532	-0.057
6	5ACT	83	7	3.082	0.634	0.675	0.061
7	5BCA	83	5	2.907	0.650	0.656	0.009

Veterinary Genetics Laboratory

Statistics and Breed-wide Allele Frequency - Border Collie

DLA Class I Haplotype Frequencies

DLA Class II Haplotype Frequencies

Allele Frequencies

Standard genetic assessment based on 33 autosomal STR loci

Standard genetic assessment based on 7 STRs in the DLA region

Standard genetic assessment for individual STR loci

Standard genetic assessment for 7 STRs in the DLA region

Contact the VGL

Statistics and Breed-wide Allele Frequency - Border Collie

DLA Class I Haplotype Frequencies

DLA Class II Haplotype Frequencies

Allele Frequencies

Standard genetic assessment based on 33 autosomal STR loci

Standard genetic assessment based on 7 STRs in the DLA region

Standard genetic assessment for individual STR loci

Standard genetic assessment for 7 STRs in the DLA region

Contact the VGL

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