Statistics and Breed-wide Allele Frequency - Border Collie

Updated Jan 8, 2025

DLA Class I Haplotype Frequencies

DLA1 #	STR types	Border Collie (n=82)
1008	386 373 289 182	0.006
1011	376 365 281 180	0.061
1012	388 369 289 188	0.049
1014	375 373 287 178	0.067
1029	380 365 281 182	0.006
1030	380 373 293 178	0.006
1045	376 371 277 186	0.140
1052	380 372 289 184	0.012
1063	382 373 289 182	0.006
1066	376 375 277 178	0.006
1068	380 373 287 181	0.207
1092	376 379 277 181	0.006
1104	386 373 289 186	0.165
1222	386 379 277 181	0.018
1236	376 379 289 181	0.226
1237	376 379 277 178	0.006
1238	376 371 277 184	0.006
1239	376 371 277 181	0.006

DLA Class II Haplotype Frequencies

DLA2 #	STR types	Border Collie (n=82)
2001	343 324 284	0.134
2002	343 327 280	0.159
2003	343 324 282	0.049
2005	339 322 280	0.012
2017	343 322 280	0.177
2022	339 327 282	0.006
2023	341 323 282	0.006
2031	339 322 282	0.006
2033	339 323 282	0.006
2037	341 327 280	0.067
2039	345 327 276	0.128
2040	345 327 280	0.006
2052	345 321 280	0.006
2053	343 324 280	0.073
2065	339 325 286	0.012
2067	343 322 284	0.073
2075	341 327 282	0.012
2096	351 322 280	0.030
2125	351 322 286	0.030
2141	343 331 280	0.006

Allele Frequencies

#	Locus Name	Allele	Border Collie (n=87)
1	AHT121	92	0.070
		94	0.105
		98	0.052
		100	0.105
		102	0.209
		104	0.041
		106	0.244
		108	0.128
		110	0.017
		112	0.029
2	AHT137	131	0.241
		137	0.057
		141	0.017
		143	0.006
		145	0.408
		147	0.063
		149	0.109
		151	0.011
		153	0.086
3	AHTH130	117	0.006
		119	0.023
		121	0.333
		123	0.006
		125	0.023
		127	0.121
		129	0.052
		131	0.236
		133	0.069
		135	0.132
4	AHTh171-A	219	0.017
		221	0.012
		225	0.122
		227	0.012
		229	0.116
		231	0.006
		233	0.448
		235	0.029
		237	0.233
		241	0.006
5	AHTh260	238	0.137
		240	0.244
		242	0.149
		244	0.012
		246	0.405
		248	0.042
		252	0.006
		254	0.006
6	AHTk211	87	0.116
		89	0.093
		91	0.733
		93	0.017
		95	0.012
		97	0.029
7	AHTk253	284	0.110
		286	0.081
		288	0.378
		290	0.012
		292	0.419
8	C22.279	114	0.047
		116	0.238
		118	0.616
		120	0.012
		124	0.058
		126	0.017
		128	0.012
9	FH2001	128	0.058
		132	0.401
		136	0.047
		140	0.012
		144	0.419
		148	0.064
10	FH2054	144	0.006
		148	0.105
		152	0.436
		156	0.128
		160	0.233
		164	0.035
		168	0.047
		172	0.006
		176	0.006
11	FH2848	232	0.024
		234	0.149
		236	0.018
		238	0.089
		240	0.214
		242	0.262
		244	0.244
12	INRA21	91	0.092
		95	0.741
		97	0.075
		101	0.086
		103	0.006
13	INU005	110	0.110
		120	0.006
		122	0.006
		124	0.337
		126	0.099
		128	0.017
		130	0.006
		132	0.419
14	INU030	144	0.209
		148	0.041
		150	0.349
		152	0.291
		154	0.105
		156	0.006
15	INU055	208	0.167
		210	0.736
		212	0.023
		214	0.017
		216	0.034
		218	0.023
16	LEI004	85	0.244
		95	0.558
		105	0.006
		107	0.169
		111	0.023
17	REN105L03	227	0.036
		231	0.036
		233	0.286
		235	0.131
		237	0.065
		239	0.155
		241	0.286
		245	0.006
18	REN162C04	200	0.110
		202	0.390
		204	0.279
		206	0.070
		208	0.151
19	REN169D01	202	0.137
		210	0.137
		212	0.095
		214	0.006
		216	0.452
		218	0.149
		220	0.018
		224	0.006
20	REN169O18	160	0.024
		162	0.059
		164	0.094
		166	0.018
		168	0.494
		170	0.312
21	REN247M23	266	0.155
		268	0.214
		270	0.202
		272	0.208
		276	0.077
		278	0.143
22	REN54P11	222	0.012
		226	0.180
		228	0.035
		232	0.465
		234	0.128
		236	0.157
		238	0.023
23	REN64E19	139	0.011
		143	0.023
		145	0.437
		147	0.247
		149	0.167
		153	0.115
24	VGL0760	12	0.052
		14	0.273
		15	0.023
		18.2	0.047
		20.2	0.151
		21.2	0.355
		22.2	0.017
		23.2	0.076
		24.2	0.006
25	VGL0910	16.1	0.029
		17.1	0.459
		18.1	0.145
		19.1	0.198
		20.1	0.076
		21.1	0.029
		22.1	0.052
		23.1	0.006
		24.1	0.006
26	VGL1063	8	0.041
		9	0.622
		11	0.006
		12	0.035
		13	0.041
		14	0.099
		15	0.087
		17	0.012
		18	0.006
		19	0.006
		20	0.029
		21	0.012
		22	0.006
27	VGL1165	14	0.012
		15	0.006
		17	0.012
		18	0.006
		20	0.337
		21	0.192
		22	0.012
		23	0.006
		24	0.006
		25	0.012
		26	0.122
		27	0.052
		28	0.110
		29	0.023
		30	0.087
		31	0.006
28	VGL1828	15	0.128
		16	0.099
		17	0.297
		19	0.081
		20	0.029
		21	0.221
		22	0.145
29	VGL2009	9	0.413
		10	0.029
		11	0.017
		12	0.017
		13	0.192
		14	0.070
		15	0.256
		16	0.006
30	VGL2409	13	0.058
		14	0.401
		15	0.041
		16	0.029
		17	0.326
		18	0.087
		19	0.035
		20	0.023
31	VGL2918	12	0.250
		13	0.145
		14	0.227
		15	0.116
		16	0.017
		17.3	0.151
		18.3	0.081
		19.3	0.006
		20.3	0.006
32	VGL3008	10	0.012
		14	0.058
		15	0.076
		16	0.279
		17	0.145
		18	0.192
		19	0.047
		20	0.105
		21	0.006
		22	0.064
		23	0.012
		24	0.006
33	VGL3235	12	0.163
		13	0.017
		14	0.267
		15	0.076
		16	0.122
		17	0.087
		18	0.262
		19	0.006

Standard genetic assessment based on 33 autosomal STR loci

Border Collie

		N	Na	Ne	Ho	He	F
	Mean	87	7.939	3.822	0.683	0.705	0.031
	SE		0.418	0.216	0.019	0.019	0.011

Standard genetic assessment based on 7 STRs in the DLA region

Border Collie

		N	Na	Ne	Ho	He	F
	Mean	87	6.143	2.976	0.667	0.657	-0.017
	SE		0.315	0.145	0.023	0.021	0.017

Standard genetic assessment for individual STR loci

Border Collie

#	Locus	N	Na	Ne	Ho	He	F
1	AHT121	87	10	6.574	0.814	0.848	0.040
2	AHT137	87	9	3.970	0.690	0.748	0.078
3	AHTH130	87	10	4.826	0.793	0.793	-0.000
4	AHTh171-A	87	10	3.516	0.721	0.716	-0.007
5	AHTh260	87	8	3.756	0.714	0.734	0.027
6	AHTk211	87	6	1.785	0.372	0.440	0.154
7	AHTk253	87	5	2.967	0.651	0.663	0.018
8	C22.279	87	7	2.259	0.570	0.557	-0.022
9	FH2001	87	6	2.891	0.616	0.654	0.058
10	FH2054	87	9	3.636	0.663	0.725	0.086
11	FH2848	87	7	4.876	0.821	0.795	-0.033
12	INRA21	87	5	1.751	0.414	0.429	0.035
13	INU005	87	8	3.212	0.663	0.689	0.038
14	INU030	87	6	3.807	0.791	0.737	-0.072
15	INU055	87	6	1.750	0.471	0.429	-0.100
16	LEI004	87	5	2.499	0.616	0.600	-0.027
17	REN105L03	87	8	4.734	0.690	0.789	0.125
18	REN162C04	87	5	3.710	0.651	0.730	0.109
19	REN169D01	87	8	3.653	0.750	0.726	-0.033
20	REN169O18	87	6	2.821	0.612	0.645	0.052
21	REN247M23	87	6	5.536	0.857	0.819	-0.046
22	REN54P11	87	7	3.428	0.686	0.708	0.031
23	REN64E19	87	6	3.407	0.713	0.707	-0.009
24	VGL0760	87	9	4.259	0.756	0.765	0.012
25	VGL0910	87	9	3.554	0.721	0.719	-0.003
26	VGL1063	87	13	2.438	0.547	0.590	0.073
27	VGL1165	87	16	5.285	0.779	0.811	0.039
28	VGL1828	87	7	5.223	0.698	0.809	0.137
29	VGL2009	87	8	3.584	0.651	0.721	0.097
30	VGL2409	87	8	3.544	0.744	0.718	-0.037
31	VGL2918	87	9	5.605	0.733	0.822	0.108
32	VGL3008	87	12	6.156	0.826	0.838	0.014
33	VGL3235	87	8	5.127	0.733	0.805	0.090

Standard genetic assessment for 7 STRs in the DLA region

Border Collie

#	Locus	N	Na	Ne	Ho	He	F
1	DLA I-3CCA	87	6	3.263	0.723	0.694	-0.042
2	DLA I-4ACA	87	7	3.274	0.733	0.695	-0.055
3	DLA I-4BCT	87	6	3.119	0.721	0.679	-0.061
4	DLA1131	87	7	3.082	0.640	0.676	0.053
5	5ACA	87	5	2.089	0.548	0.521	-0.051
6	5ACT	87	7	3.127	0.651	0.680	0.043
7	5BCA	87	5	2.876	0.655	0.652	-0.004

Veterinary Genetics Laboratory

Statistics and Breed-wide Allele Frequency - Border Collie

DLA Class I Haplotype Frequencies

DLA Class II Haplotype Frequencies

Allele Frequencies

Standard genetic assessment based on 33 autosomal STR loci

Standard genetic assessment based on 7 STRs in the DLA region

Standard genetic assessment for individual STR loci

Standard genetic assessment for 7 STRs in the DLA region

Contact the VGL

Statistics and Breed-wide Allele Frequency - Border Collie

DLA Class I Haplotype Frequencies

DLA Class II Haplotype Frequencies

Allele Frequencies

Standard genetic assessment based on 33 autosomal STR loci

Standard genetic assessment based on 7 STRs in the DLA region

Standard genetic assessment for individual STR loci

Standard genetic assessment for 7 STRs in the DLA region

Contact the VGL

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