Statistics and Breed-wide Allele Frequency - Border Collie

Updated Feb 25, 2025

DLA Class I Haplotype Frequencies

DLA1 #	STR types	Border Collie (n=82)
1008	386 373 289 182	0.006
1011	376 365 281 180	0.061
1012	388 369 289 188	0.049
1014	375 373 287 178	0.067
1029	380 365 281 182	0.006
1030	380 373 293 178	0.006
1045	376 371 277 186	0.140
1052	380 372 289 184	0.012
1063	382 373 289 182	0.006
1066	376 375 277 178	0.006
1068	380 373 287 181	0.207
1092	376 379 277 181	0.006
1104	386 373 289 186	0.165
1222	386 379 277 181	0.018
1236	376 379 289 181	0.226
1237	376 379 277 178	0.006
1238	376 371 277 184	0.006
1239	376 371 277 181	0.006

DLA Class II Haplotype Frequencies

DLA2 #	STR types	Border Collie (n=82)
2001	343 324 284	0.134
2002	343 327 280	0.159
2003	343 324 282	0.049
2005	339 322 280	0.012
2017	343 322 280	0.177
2022	339 327 282	0.006
2023	341 323 282	0.006
2031	339 322 282	0.006
2033	339 323 282	0.006
2037	341 327 280	0.067
2039	345 327 276	0.128
2040	345 327 280	0.006
2052	345 321 280	0.006
2053	343 324 280	0.073
2065	339 325 286	0.012
2067	343 322 284	0.073
2075	341 327 282	0.012
2096	351 322 280	0.030
2125	351 322 286	0.030
2141	343 331 280	0.006

Allele Frequencies

#	Locus Name	Allele	Border Collie (n=88)
1	AHT121	92	0.069
		94	0.103
		98	0.052
		100	0.103
		102	0.207
		104	0.040
		106	0.247
		108	0.132
		110	0.017
		112	0.029
2	AHT137	131	0.239
		137	0.057
		141	0.017
		143	0.006
		145	0.409
		147	0.063
		149	0.108
		151	0.011
		153	0.091
3	AHTH130	117	0.006
		119	0.023
		121	0.335
		123	0.006
		125	0.023
		127	0.119
		129	0.051
		131	0.239
		133	0.068
		135	0.131
4	AHTh171-A	219	0.017
		221	0.011
		225	0.121
		227	0.011
		229	0.121
		231	0.006
		233	0.448
		235	0.029
		237	0.230
		241	0.006
5	AHTh260	238	0.141
		240	0.241
		242	0.147
		244	0.012
		246	0.406
		248	0.041
		252	0.006
		254	0.006
6	AHTk211	87	0.121
		89	0.098
		91	0.724
		93	0.017
		95	0.011
		97	0.029
7	AHTk253	284	0.115
		286	0.080
		288	0.379
		290	0.011
		292	0.414
8	C22.279	114	0.046
		116	0.241
		118	0.615
		120	0.011
		124	0.057
		126	0.017
		128	0.011
9	FH2001	128	0.057
		132	0.408
		136	0.046
		140	0.011
		144	0.414
		148	0.063
10	FH2054	144	0.006
		148	0.109
		152	0.431
		156	0.126
		160	0.230
		164	0.034
		168	0.052
		172	0.006
		176	0.006
11	FH2848	232	0.024
		234	0.153
		236	0.018
		238	0.088
		240	0.212
		242	0.265
		244	0.241
12	INRA21	91	0.097
		95	0.733
		97	0.074
		101	0.091
		103	0.006
13	INU005	110	0.115
		120	0.006
		122	0.006
		124	0.333
		126	0.098
		128	0.017
		130	0.006
		132	0.420
14	INU030	144	0.218
		148	0.040
		150	0.345
		152	0.287
		154	0.103
		156	0.006
15	INU055	208	0.165
		210	0.739
		212	0.023
		214	0.017
		216	0.034
		218	0.023
16	LEI004	85	0.247
		95	0.557
		105	0.006
		107	0.167
		111	0.023
17	REN105L03	227	0.035
		231	0.035
		233	0.288
		235	0.129
		237	0.065
		239	0.153
		241	0.288
		245	0.006
18	REN162C04	200	0.109
		202	0.385
		204	0.287
		206	0.069
		208	0.149
19	REN169D01	202	0.135
		210	0.147
		212	0.094
		214	0.006
		216	0.447
		218	0.147
		220	0.018
		224	0.006
20	REN169O18	160	0.023
		162	0.058
		164	0.093
		166	0.017
		168	0.500
		170	0.308
21	REN247M23	266	0.153
		268	0.218
		270	0.200
		272	0.212
		276	0.076
		278	0.141
22	REN54P11	222	0.011
		226	0.178
		228	0.040
		232	0.460
		234	0.126
		236	0.161
		238	0.023
23	REN64E19	139	0.011
		143	0.023
		145	0.443
		147	0.244
		149	0.165
		153	0.114
24	VGL0760	12	0.052
		14	0.276
		15	0.023
		18.2	0.046
		20.2	0.149
		21.2	0.351
		22.2	0.017
		23.2	0.080
		24.2	0.006
25	VGL0910	16.1	0.029
		17.1	0.460
		18.1	0.144
		19.1	0.195
		20.1	0.075
		21.1	0.034
		22.1	0.052
		23.1	0.006
		24.1	0.006
26	VGL1063	8	0.040
		9	0.626
		11	0.006
		12	0.034
		13	0.040
		14	0.098
		15	0.086
		17	0.011
		18	0.006
		19	0.006
		20	0.029
		21	0.011
		22	0.006
27	VGL1165	14	0.011
		15	0.006
		17	0.011
		18	0.006
		20	0.339
		21	0.190
		22	0.011
		23	0.006
		24	0.006
		25	0.011
		26	0.126
		27	0.052
		28	0.109
		29	0.023
		30	0.086
		31	0.006
28	VGL1828	15	0.126
		16	0.098
		17	0.293
		19	0.080
		20	0.034
		21	0.224
		22	0.144
29	VGL2009	9	0.408
		10	0.029
		11	0.029
		12	0.017
		13	0.190
		14	0.069
		15	0.253
		16	0.006
30	VGL2409	13	0.057
		14	0.397
		15	0.040
		16	0.034
		17	0.328
		18	0.086
		19	0.034
		20	0.023
31	VGL2918	12	0.247
		13	0.144
		14	0.236
		15	0.115
		16	0.017
		17.3	0.149
		18.3	0.080
		19.3	0.006
		20.3	0.006
32	VGL3008	10	0.011
		14	0.057
		15	0.086
		16	0.276
		17	0.144
		18	0.190
		19	0.046
		20	0.103
		21	0.006
		22	0.063
		23	0.011
		24	0.006
33	VGL3235	12	0.161
		13	0.017
		14	0.270
		15	0.075
		16	0.121
		17	0.086
		18	0.264
		19	0.006

Standard genetic assessment based on 33 autosomal STR loci

Border Collie

		N	Na	Ne	Ho	He	F
	Mean	88	7.939	3.827	0.682	0.706	0.033
	SE		0.418	0.215	0.019	0.019	0.011

Standard genetic assessment based on 7 STRs in the DLA region

Border Collie

		N	Na	Ne	Ho	He	F
	Mean	88	6.143	2.988	0.669	0.658	-0.018
	SE		0.315	0.146	0.022	0.021	0.016

Standard genetic assessment for individual STR loci

Border Collie

#	Locus	N	Na	Ne	Ho	He	F
1	AHT121	88	10	6.539	0.816	0.847	0.037
2	AHT137	88	9	3.971	0.693	0.748	0.074
3	AHTH130	88	10	4.785	0.795	0.791	-0.006
4	AHTh171-A	88	10	3.516	0.724	0.716	-0.012
5	AHTh260	88	8	3.754	0.718	0.734	0.022
6	AHTk211	88	6	1.819	0.379	0.450	0.158
7	AHTk253	88	5	2.986	0.655	0.665	0.015
8	C22.279	88	7	2.260	0.575	0.558	-0.031
9	FH2001	88	6	2.880	0.609	0.653	0.067
10	FH2054	88	9	3.697	0.667	0.729	0.086
11	FH2848	88	7	4.875	0.824	0.795	-0.036
12	INRA21	88	5	1.785	0.420	0.440	0.044
13	INU005	88	8	3.223	0.667	0.690	0.033
14	INU030	88	6	3.824	0.782	0.738	-0.058
15	INU055	88	6	1.738	0.466	0.425	-0.097
16	LEI004	88	5	2.499	0.621	0.600	-0.035
17	REN105L03	88	8	4.695	0.694	0.787	0.118
18	REN162C04	88	5	3.706	0.644	0.730	0.118
19	REN169D01	88	8	3.695	0.741	0.729	-0.016
20	REN169O18	88	6	2.795	0.605	0.642	0.058
21	REN247M23	88	6	5.513	0.859	0.819	-0.049
22	REN54P11	88	7	3.481	0.690	0.713	0.032
23	REN64E19	88	6	3.369	0.705	0.703	-0.002
24	VGL0760	88	9	4.284	0.759	0.767	0.010
25	VGL0910	88	9	3.564	0.724	0.719	-0.007
26	VGL1063	88	13	2.409	0.540	0.585	0.076
27	VGL1165	88	16	5.258	0.782	0.810	0.035
28	VGL1828	88	7	5.264	0.701	0.810	0.134
29	VGL2009	88	8	3.661	0.644	0.727	0.114
30	VGL2409	88	8	3.574	0.747	0.720	-0.037
31	VGL2918	88	9	5.567	0.724	0.820	0.117
32	VGL3008	88	12	6.227	0.816	0.839	0.028
33	VGL3235	88	8	5.085	0.736	0.803	0.084

Standard genetic assessment for 7 STRs in the DLA region

Border Collie

#	Locus	N	Na	Ne	Ho	He	F
1	DLA I-3CCA	88	6	3.303	0.726	0.697	-0.042
2	DLA I-4ACA	88	7	3.292	0.736	0.696	-0.057
3	DLA I-4BCT	88	6	3.128	0.713	0.680	-0.047
4	DLA1131	88	7	3.094	0.644	0.677	0.049
5	5ACA	88	5	2.099	0.553	0.524	-0.056
6	5ACT	88	7	3.126	0.655	0.680	0.037
7	5BCA	88	5	2.872	0.659	0.652	-0.011

Veterinary Genetics Laboratory

Statistics and Breed-wide Allele Frequency - Border Collie

DLA Class I Haplotype Frequencies

DLA Class II Haplotype Frequencies

Allele Frequencies

Standard genetic assessment based on 33 autosomal STR loci

Standard genetic assessment based on 7 STRs in the DLA region

Standard genetic assessment for individual STR loci

Standard genetic assessment for 7 STRs in the DLA region

Contact the VGL

Statistics and Breed-wide Allele Frequency - Border Collie

DLA Class I Haplotype Frequencies

DLA Class II Haplotype Frequencies

Allele Frequencies

Standard genetic assessment based on 33 autosomal STR loci

Standard genetic assessment based on 7 STRs in the DLA region

Standard genetic assessment for individual STR loci

Standard genetic assessment for 7 STRs in the DLA region

Contact the VGL

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